http://www.avajava.com/tutorials/lessons/how-do-i-do-a-find-and-replace-in-multiple-files-in-eclipse.html?page=2
but searching for things that span more than one line, wasn't covered almost anywhere, so here goes.
1. multi line search can only be accomplished by regex in eclipse (I'm using helios), so searching for something like -
replace me
replace me 2
would require an expressions like 'word1[\s\S]*word2' or 'word1[\s\S]*?word2' for a non-greedy expression.
to get the text back in, you'll need to also put it in one line, so a site like this can come in handy:
http://kangax.github.com/html-minifier/